PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03446.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 388aa    MW: 40653 Da    PI: 7.7177
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03446.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-127499227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             +++ C++f+rtG Ck+G++Ck++H++
  Rsa1.0_03446.1_g00003.1 74 GQPVCQHFMRTGDCKFGASCKYHHPR 99
                             5789********************96 PP

2zf-CCCH40.93.3e-13124148226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C++++rtG+Ck+G++CkF+H+
  Rsa1.0_03446.1_g00003.1 124 GEKECPYYMRTGQCKFGSTCKFHHP 148
                              7899********************9 PP

3zf-CCCH36.77.2e-12247272126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +++++C +f+rtG CkyG +C+++H+
  Rsa1.0_03446.1_g00003.1 247 PGQPECTYFLRTGDCKYGTSCRYHHP 272
                              5789*********************9 PP

4zf-CCCH31.92.2e-10292317126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++t+ C++fa+ G+Ck G+ CkF H+
  Rsa1.0_03446.1_g00003.1 292 PGTAQCSHFAQHGICKLGPACKFDHS 317
                              689**********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.7672100IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-57299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-674100IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-97499IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-57799IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-7122149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854122150IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-11124148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6125150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5128147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591246274IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6246273IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-9248272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6250274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4252272IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366291319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5292318IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8292317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEQHGGGGTG DEGSLSDPVT DTGLEASMSR LGLGGGGSES YPKRPDEPDC VYYLRTGVSG  60
DLRTEAGEVP ERMGQPVCQH FMRTGDCKFG ASCKYHHPRQ GSGGGDSVTS PISFNHMGFP  120
LRPGEKECPY YMRTGQCKFG STCKFHHPVP PGDHQAPSHH PLPTSPPAIY PSQQFGVVVP  180
RPYPTYSQMV LSPGMVGWNP YQASVSAIPS PGTPSSVYGT KPLSPSAPAY QSGSASSNKE  240
QSFPQRPGQP ECTYFLRTGD CKYGTSCRYH HPLEAASPKG ISLSHIGLPL RPGTAQCSHF  300
AQHGICKLGP ACKFDHSSSL STLAPSLSSS SDQGTEVHSS SSIKPKTTAS GESETVAAGV  360
SSSSSMTGGV SNSKPAESKN GDSAKHSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013682091.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
RefseqXP_013730210.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-166C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A078DJ120.0A0A078DJ12_BRANA; BnaA03g07170D protein
STRINGBra006465.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-147C3H family protein